PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G143400.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 220aa    MW: 25603.3 Da    PI: 9.4417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G143400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171158148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd+ll+++++++G g+W++++ + g++R++k+c++rw +yl
  Aqcoe6G143400.2.p 11 KGKWSEEEDDLLKKCIEKYGEGNWHKVPLRTGLNRCRKSCRLRWCNYL 58
                       79********************************************97 PP

2Myb_DNA-binding36.88.8e-1264108147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg ++ +E +l+++  k+lG++ W++Ia++++ gRt +++k+ w ++
  Aqcoe6G143400.2.p  64 RGEFSWDEIDLIIKMQKLLGNR-WSLIAARLQ-GRTSNDIKNLWTSH 108
                        899*******************.*********.*********99765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-22661IPR009057Homeodomain-like
PROSITE profilePS5129427.252662IPR017930Myb domain
SuperFamilySSF466898.8E-288105IPR009057Homeodomain-like
SMARTSM007173.2E-161060IPR001005SANT/Myb domain
PfamPF002497.2E-171158IPR001005SANT/Myb domain
CDDcd001675.29E-111358No hitNo description
Gene3DG3DSA:1.10.10.607.7E-1962113IPR009057Homeodomain-like
PROSITE profilePS5129415.9363113IPR017930Myb domain
SMARTSM007172.5E-1063111IPR001005SANT/Myb domain
PfamPF002491.7E-1064108IPR001005SANT/Myb domain
CDDcd001675.89E-666109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEKTSSSGLK KGKWSEEEDD LLKKCIEKYG EGNWHKVPLR TGLNRCRKSC RLRWCNYLNP  60
KAKRGEFSWD EIDLIIKMQK LLGNRWSLIA ARLQGRTSND IKNLWTSHIS KSLRKNQGKQ  120
TETVTPKIKA IKPKPLTFSQ NSPWMKSRLT EKAIQREELH SNSSLDFQKE PSTSLWDGIT  180
FSEEDILGWT DEFGMKSFVN ELTEPEKTEM CLDYLNIWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-1891132105MYB PROTO-ONCOGENE PROTEIN
1a5j_A1e-1891135108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9080900.0FJ908090.1 Aquilegia formosa R2R3-myb transcription factor (MYB12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605381.18e-61PREDICTED: transcription factor MYB114-like
RefseqNP_001306786.18e-61transcription factor MYB114-like
RefseqXP_009627993.19e-61PREDICTED: transcription factor MYB114-like
RefseqXP_016468884.19e-61PREDICTED: transcription factor MYB114-like
TrEMBLC4PAV21e-149C4PAV2_AQUFO; R2R3-myb transcription factor
STRINGVIT_14s0006g01290.t018e-59(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-56myb domain protein 113